HL_6GQV_029

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

6GQV|1|1|A|1271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|1|U|1267
6GQV|1|1|G|1268
6GQV|1|1|U|1269
6GQV|1|1|A|1270
6GQV|1|1|A|1271
6GQV|1|1|C|1272
6GQV|1|1|A|1273
6GQV|1|1|A|1274

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AX

Elongation factor 2

Chain P0

60S acidic ribosomal protein P0

Chain P2

60S ribosomal protein L12-A

Chain m

Ubiquitin-60S ribosomal protein L40