HL_6GQV_034

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_034 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1718

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GQV|1|1|G|1544
6GQV|1|1|A|1545
6GQV|1|1|A|1546
6GQV|1|1|G|1547
6GQV|1|1|C|1548
6GQV|1|1|U|1549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A