HL_6GQV_038

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGUUAUCUUUU

Length

11 nucleotides

Bulged bases

6GQV|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_038 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3883

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6GQV|1|1|A|1679
6GQV|1|1|G|1680
6GQV|1|1|U|1681
6GQV|1|1|U|1682
6GQV|1|1|A|1683
6GQV|1|1|U|1684
6GQV|1|1|C|1685
6GQV|1|1|U|1686
6GQV|1|1|U|1687
6GQV|1|1|U|1688
6GQV|1|1|U|1689

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A