HL_6GQV_048

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

6GQV|1|1|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_048 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.1926

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GQV|1|1|A|2164
6GQV|1|1|G|2165
6GQV|1|1|A|2166
6GQV|1|1|A|2167
6GQV|1|1|A|2168
6GQV|1|1|G|2169
6GQV|1|1|U|2170

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A