HL_6GQV_049

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

6GQV|1|1|A|2222

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_049 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.3491

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6GQV|1|1|A|2220
6GQV|1|1|G|2221
6GQV|1|1|A|2222
6GQV|1|1|A|2223
6GQV|1|1|A|2224
6GQV|1|1|U|2225

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L1-A

Chain i

60S ribosomal protein L36-A

Chain o

60S ribosomal protein L42-A