HL_6GQV_052

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6GQV|1|1|A|2372, 6GQV|1|1|A|2373, 6GQV|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_052 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1588

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6GQV|1|1|G|2369
6GQV|1|1|G|2370
6GQV|1|1|G|2371
6GQV|1|1|A|2372
6GQV|1|1|A|2373
6GQV|1|1|C|2374
6GQV|1|1|G|2375
6GQV|1|1|G|2376
6GQV|1|1|G|2377
6GQV|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain f

60S ribosomal protein L33-A