HL_6GQV_056

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GQV|1|1|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1714

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GQV|1|1|C|2616
6GQV|1|1|U|2617
6GQV|1|1|G|2618
6GQV|1|1|G|2619
6GQV|1|1|G|2620
6GQV|1|1|G|2621
6GQV|1|1|C|2622
6GQV|1|1|G|2623
6GQV|1|1|G|2624

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29