HL_6GQV_058

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAACAGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_058 not in the Motif Atlas

Geometric match to HL_7RQB_055

Geometric discrepancy: 0.2874

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GQV|1|1|G|2672
6GQV|1|1|A|2673
6GQV|1|1|A|2674
6GQV|1|1|C|2675
6GQV|1|1|A|2676
6GQV|1|1|G|2677
6GQV|1|1|A|2678
6GQV|1|1|A|2679
6GQV|1|1|A|2680
6GQV|1|1|U|2681
6GQV|1|1|C|2682

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L11-B