HL_6GQV_067

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_067 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.1877

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6GQV|1|1|C|3025
6GQV|1|1|G|3026
6GQV|1|1|A|3027
6GQV|1|1|G|3028
6GQV|1|1|A|3029
6GQV|1|1|G|3030

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AX

Elongation factor 2

Chain H

60S ribosomal protein L9-A

Chain m

Ubiquitin-60S ribosomal protein L40