HL_6GQV_099

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6GQV|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|G|1188
6GQV|1|2|A|1189
6GQV|1|2|C|1190
6GQV|1|2|U|1191
6GQV|1|2|C|1192
6GQV|1|2|A|1193
6GQV|1|2|A|1194
6GQV|1|2|C|1195
6GQV|1|2|A|1196
6GQV|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AK

40S ribosomal protein S20

Chain AT

40S ribosomal protein S29-A

Chain AY

Transfer RNA; tRNA