HL_6GQV_100

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6GQV|1|2|G|1243, 6GQV|1|2|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_100 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3164

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

6GQV|1|2|A|1238
6GQV|1|2|U|1239
6GQV|1|2|U|1240
6GQV|1|2|G|1241
6GQV|1|2|A|1242
6GQV|1|2|G|1243
6GQV|1|2|A|1244
6GQV|1|2|G|1245
6GQV|1|2|C|1246
6GQV|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AF

40S ribosomal protein S15

Chain AT

40S ribosomal protein S29-A

Chain AW

Ubiquitin-40S ribosomal protein S31