HL_6GQV_103

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCAUUUGC

Length

8 nucleotides

Bulged bases

6GQV|1|2|U|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_103 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.4614

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6GQV|1|2|G|1358
6GQV|1|2|C|1359
6GQV|1|2|A|1360
6GQV|1|2|U|1361
6GQV|1|2|U|1362
6GQV|1|2|U|1363
6GQV|1|2|G|1364
6GQV|1|2|C|1365

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A

Chain v

40S ribosomal protein S5