HL_6GQV_108

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

6GQV|1|2|A|1702, 6GQV|1|2|U|1704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|A|1691
6GQV|1|2|G|1692
6GQV|1|2|A|1693
6GQV|1|2|A|1694
6GQV|1|2|G|1695
6GQV|1|2|G|1696
6GQV|1|2|G|1697
6GQV|1|2|G|1698
6GQV|1|2|G|1699
6GQV|1|2|C|1700
6GQV|1|2|A|1701
6GQV|1|2|A|1702
6GQV|1|2|C|1703
6GQV|1|2|U|1704
6GQV|1|2|C|1705
6GQV|1|2|C|1706
6GQV|1|2|A|1707
6GQV|1|2|U|1708
6GQV|1|2|C|1709
6GQV|1|2|U|1710

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain w

40S ribosomal protein S6-A