HL_6GQV_118

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GQV_118 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.3854

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6GQV|1|AY|G|53
6GQV|1|AY|U|54
6GQV|1|AY|U|55
6GQV|1|AY|C|56
6GQV|1|AY|G|57
6GQV|1|AY|A|58
6GQV|1|AY|U|59
6GQV|1|AY|C|60
6GQV|1|AY|C|61

Current chains

Chain AY

Transfer RNA - Phe

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain BA

60S ribosomal protein L1-A