HL_6GQV_122

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

6GQV|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|1|A|2896
6GQV|1|1|A|2897
6GQV|1|1|G|2898
6GQV|1|1|C|2899
6GQV|1|1|A|2900
6GQV|1|1|G|2901
6GQV|1|1|A|2902
6GQV|1|1|A|2903
6GQV|1|1|U|2904
6GQV|1|1|U|2905

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AX

Elongation factor 2

Chain H

60S ribosomal protein L9-A

Chain m

Ubiquitin-60S ribosomal protein L40