HL_6GQV_123

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGUGGUAAUUCUAGA

Length

15 nucleotides

Bulged bases

6GQV|1|2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQV|1|2|U|150
6GQV|1|2|G|151
6GQV|1|2|U|152
6GQV|1|2|G|153
6GQV|1|2|G|154
6GQV|1|2|U|155
6GQV|1|2|A|156
6GQV|1|2|A|157
6GQV|1|2|U|158
6GQV|1|2|U|159
6GQV|1|2|C|160
6GQV|1|2|U|161
6GQV|1|2|A|162
6GQV|1|2|G|163
6GQV|1|2|A|164

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain AX

Elongation factor 2

Chain w

40S ribosomal protein S6-A