HL_6GSJ_009

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6GSJ|1|13|A|344, 6GSJ|1|13|C|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_009 not in the Motif Atlas

Homologous match to HL_5J7L_009

Geometric discrepancy: 0.5501

The information below is about HL_5J7L_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6GSJ|1|13|C|342
6GSJ|1|13|U|343
6GSJ|1|13|A|344
6GSJ|1|13|C|345
6GSJ|1|13|G|346
6GSJ|1|13|G|347

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14

Chain B8

50S ribosomal protein L19