HL_6GSJ_057

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GCUAGGACCAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_057 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.216

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GSJ|1|14|G|875
6GSJ|1|14|C|876
6GSJ|1|14|U|877
6GSJ|1|14|A|878
6GSJ|1|14|G|879
6GSJ|1|14|G|880
6GSJ|1|14|A|896
6GSJ|1|14|C|897
6GSJ|1|14|C|898
6GSJ|1|14|A|899
6GSJ|1|14|A|900
6GSJ|1|14|A|901
6GSJ|1|14|C|902

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25