HL_6GSJ_161

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

6GSJ|1|1H|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_161 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2463

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6GSJ|1|1H|G|1063
6GSJ|1|1H|C|1064
6GSJ|1|1H|U|1065
6GSJ|1|1H|U|1066
6GSJ|1|1H|A|1067
6GSJ|1|1H|G|1068
6GSJ|1|1H|A|1069
6GSJ|1|1H|A|1070
6GSJ|1|1H|G|1071
6GSJ|1|1H|C|1072
6GSJ|1|1H|A|1073
6GSJ|1|1H|G|1074
6GSJ|1|1H|C|1075

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains