HL_6GSJ_208
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CUUGGU(AET)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: AET
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSJ_208 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.1324
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6GSJ|1|1L|C|31
6GSJ|1|1L|U|32
6GSJ|1|1L|U|33
6GSJ|1|1L|G|34
6GSJ|1|1L|G|35
6GSJ|1|1L|U|36
6GSJ|1|1L|AET|37
6GSJ|1|1L|A|38
6GSJ|1|1L|G|39
Current chains
- Chain 1L
- tRNAThr
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3A
- 30S ribosomal protein S12
- Chain 4L
- RNA (27-MER)
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