3D structure

PDB id
6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
GG(5MU)(PSU)CAAAUCC
Length
11 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GSJ_212 not in the Motif Atlas
Homologous match to HL_4WQ1_225
Geometric discrepancy: 0.2677
The information below is about HL_4WQ1_225
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GSJ|1|2K|G|53
6GSJ|1|2K|G|54
6GSJ|1|2K|5MU|55
6GSJ|1|2K|PSU|56
6GSJ|1|2K|C|57
6GSJ|1|2K|A|58
6GSJ|1|2K|A|59
6GSJ|1|2K|A|60
6GSJ|1|2K|U|61
6GSJ|1|2K|C|62
6GSJ|1|2K|C|63

Current chains

Chain 2K
tRNAfMet

Nearby chains

Chain 1H
Large subunit ribosomal RNA; LSU rRNA
Chain 41
50S ribosomal protein L5
Chain 88
50S ribosomal protein L16
Chain I8
50S ribosomal protein L27

Coloring options:


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