HL_6GSJ_232

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

G(5MU)(PSU)CGACUC

Length

9 nucleotides

Bulged bases

6GSJ|1|1K|C|59

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSJ_232 not in the Motif Atlas

Homologous match to HL_6GSK_204

Geometric discrepancy: 0.2813

The information below is about HL_6GSK_204

Detailed Annotation

T-loop

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6GSJ|1|1K|G|53
6GSJ|1|1K|5MU|54
6GSJ|1|1K|PSU|55
6GSJ|1|1K|C|56
6GSJ|1|1K|G|57
6GSJ|1|1K|A|58
6GSJ|1|1K|C|59
6GSJ|1|1K|U|60
6GSJ|1|1K|C|61

Current chains

Chain 1K

tRNAThr

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 88

50S ribosomal protein L16