HL_6GSJ_233
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- G(5MU)(PSU)CGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSJ_233 not in the Motif Atlas
- Homologous match to HL_6GSK_204
- Geometric discrepancy: 0.3901
- The information below is about HL_6GSK_204
- Detailed Annotation
- T-loop
- Broad Annotation
- T-loop
- Motif group
- HL_63894.2
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6GSJ|1|1L|G|53
6GSJ|1|1L|5MU|54
6GSJ|1|1L|PSU|55
6GSJ|1|1L|C|56
6GSJ|1|1L|G|57
6GSJ|1|1L|A|58
6GSJ|1|1L|C|59
6GSJ|1|1L|U|60
6GSJ|1|1L|C|61
Current chains
- Chain 1L
- tRNAThr
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 45
- 50S ribosomal protein L16
- Chain D5
- 50S ribosomal protein L25
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