HL_6GSK_039
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSK_039 not in the Motif Atlas
- Homologous match to HL_7RQB_008
- Geometric discrepancy: 0.0671
- The information below is about HL_7RQB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.7
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 9
Unit IDs
6GSK|1|14|C|246
6GSK|1|14|G|247
6GSK|1|14|G|248
6GSK|1|14|C|249
6GSK|1|14|G|250
6GSK|1|14|A|251
6GSK|1|14|G|252
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 35
- 50S ribosomal protein L15
- Chain 3L
- Transfer RNA; tRNA
- Chain F5
- 50S ribosomal protein L28
- Chain M5
- 50S ribosomal protein L35
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