HL_6GSK_080

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6GSK|1|14|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_080 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0904

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6GSK|1|14|G|1949
6GSK|1|14|G|1950
6GSK|1|14|U|1951
6GSK|1|14|A|1952
6GSK|1|14|A|1953
6GSK|1|14|G|1954
6GSK|1|14|U|1955
6GSK|1|14|U|1956
6GSK|1|14|C|1957

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA

Chain 25

50S ribosomal protein L14