HL_6GSK_091

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

6GSK|1|14|A|2476, 6GSK|1|14|C|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_091 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3143

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GSK|1|14|C|2471
6GSK|1|14|G|2472
6GSK|1|14|U|2473
6GSK|1|14|C|2474
6GSK|1|14|C|2475
6GSK|1|14|A|2476
6GSK|1|14|C|2477
6GSK|1|14|A|2478
6GSK|1|14|G|2479

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16