HL_6GSK_105

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

6GSK|1|1G|U|189, 6GSK|1|1G|G|190, 6GSK|1|1G|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_105 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1437

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6GSK|1|1G|C|186|||F
6GSK|1|1G|C|187
6GSK|1|1G|U|188
6GSK|1|1G|U|189
6GSK|1|1G|G|190
6GSK|1|1G|G|191
6GSK|1|1G|G|191|||A

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 8A

30S ribosomal protein S17

Chain BA

30S ribosomal protein S20