HL_6GSK_117

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_117 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1304

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6GSK|1|1G|C|726
6GSK|1|1G|G|727
6GSK|1|1G|A|728
6GSK|1|1G|A|729
6GSK|1|1G|G|730
6GSK|1|1G|G|731

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 6A

30S ribosomal protein S15

Chain 9A

30S ribosomal protein S18