HL_6GSK_130

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GAUCAGCCAUGC

Length

12 nucleotides

Bulged bases

6GSK|1|1G|C|1359, 6GSK|1|1G|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|1G|G|1356
6GSK|1|1G|A|1357
6GSK|1|1G|U|1358
6GSK|1|1G|C|1359
6GSK|1|1G|A|1360
6GSK|1|1G|G|1361
6GSK|1|1G|C|1362
6GSK|1|1G|C|1362|||A
6GSK|1|1G|A|1363
6GSK|1|1G|U|1364
6GSK|1|1G|G|1365
6GSK|1|1G|C|1366

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1B

30S ribosomal protein Thx

Chain 22

30S ribosomal protein S3

Chain 4A

30S ribosomal protein S13

Chain 5A

30S ribosomal protein S14 type Z

Chain 82

30S ribosomal protein S9