HL_6GSK_144

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6GSK|1|1H|G|329, 6GSK|1|1H|A|330, 6GSK|1|1H|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_144 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.0822

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6GSK|1|1H|G|327
6GSK|1|1H|U|328
6GSK|1|1H|G|329
6GSK|1|1H|A|330
6GSK|1|1H|A|331
6GSK|1|1H|A|332
6GSK|1|1H|G|333
6GSK|1|1H|C|334
6GSK|1|1H|C|335

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24