HL_6GSK_156

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6GSK|1|1H|A|781, 6GSK|1|1H|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_156 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1295

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6GSK|1|1H|U|779
6GSK|1|1H|G|780
6GSK|1|1H|A|781
6GSK|1|1H|A|782
6GSK|1|1H|A|783
6GSK|1|1H|A|784
6GSK|1|1H|G|785

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2