HL_6GSK_167

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6GSK|1|1H|U|1396, 6GSK|1|1H|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_167 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1033

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GSK|1|1H|G|1389
6GSK|1|1H|U|1390
6GSK|1|1H|U|1391
6GSK|1|1H|A|1392
6GSK|1|1H|A|1393
6GSK|1|1H|U|1394
6GSK|1|1H|A|1395
6GSK|1|1H|U|1396
6GSK|1|1H|U|1397
6GSK|1|1H|C|1398

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23