HL_6GSK_172

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6GSK|1|1H|A|1614, 6GSK|1|1H|A|1616, 6GSK|1|1H|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_172 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0956

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6GSK|1|1H|C|1612
6GSK|1|1H|G|1613
6GSK|1|1H|A|1614
6GSK|1|1H|C|1615
6GSK|1|1H|A|1616
6GSK|1|1H|C|1617
6GSK|1|1H|A|1618
6GSK|1|1H|G|1619

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain P8

50S ribosomal protein L34