HL_6GSK_185

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6GSK|1|1H|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_185 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0924

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSK|1|1H|C|2248
6GSK|1|1H|U|2249
6GSK|1|1H|G|2250
6GSK|1|1H|G|2251
6GSK|1|1H|G|2252
6GSK|1|1H|G|2253
6GSK|1|1H|C|2254
6GSK|1|1H|G|2255
6GSK|1|1H|G|2256

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 2K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27