HL_6GSK_210
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSK_210 not in the Motif Atlas
- Homologous match to HL_5E81_213
- Geometric discrepancy: 0.1146
- The information below is about HL_5E81_213
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
6GSK|1|2K|G|54
6GSK|1|2K|5MU|55
6GSK|1|2K|PSU|56
6GSK|1|2K|C|57
6GSK|1|2K|A|58
6GSK|1|2K|A|59
6GSK|1|2K|A|60
6GSK|1|2K|U|61
6GSK|1|2K|C|62
Current chains
- Chain 2K
- tRNAfMet
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 41
- 50S ribosomal protein L5
- Chain 88
- 50S ribosomal protein L16
Coloring options: