HL_6GSK_219

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

6GSK|1|3L|A|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6GSK|1|3L|G|53
6GSK|1|3L|U|54
6GSK|1|3L|U|55
6GSK|1|3L|C|56
6GSK|1|3L|G|57
6GSK|1|3L|A|58
6GSK|1|3L|A|59
6GSK|1|3L|U|60
6GSK|1|3L|C|61

Current chains

Chain 3L

tRNAThr

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA