HL_6GSK_228

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GGCAAAUCC

Length

9 nucleotides

Bulged bases

6GSK|1|1H|C|1493, 6GSK|1|1H|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSK_228 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3104

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6GSK|1|1H|G|1491
6GSK|1|1H|G|1492
6GSK|1|1H|C|1493
6GSK|1|1H|A|1494
6GSK|1|1H|A|1495
6GSK|1|1H|A|1496
6GSK|1|1H|U|1497
6GSK|1|1H|C|1498
6GSK|1|1H|C|1499

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2