HL_6GSL_028

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_028 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1182

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GSL|1|13|C|1314
6GSL|1|13|U|1315
6GSL|1|13|G|1316
6GSL|1|13|C|1317
6GSL|1|13|A|1318
6GSL|1|13|A|1319
6GSL|1|13|C|1320
6GSL|1|13|C|1321
6GSL|1|13|C|1322
6GSL|1|13|G|1323

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 4I

30S ribosomal protein S13

Chain 5I

30S ribosomal protein S14 type Z

Chain AI

30S ribosomal protein S19