HL_6GSL_060

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6GSL|1|14|A|1067, 6GSL|1|14|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_060 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.272

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GSL|1|14|C|1064
6GSL|1|14|U|1065
6GSL|1|14|U|1066
6GSL|1|14|A|1067
6GSL|1|14|G|1068
6GSL|1|14|A|1069
6GSL|1|14|A|1070
6GSL|1|14|G|1071
6GSL|1|14|C|1072
6GSL|1|14|A|1073
6GSL|1|14|G|1074

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L25