HL_6GSL_091

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6GSL|1|14|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_091 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0919

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6GSL|1|14|C|2404
6GSL|1|14|G|2405
6GSL|1|14|U|2406
6GSL|1|14|G|2407
6GSL|1|14|U|2408
6GSL|1|14|G|2409
6GSL|1|14|G|2410
6GSL|1|14|A|2411
6GSL|1|14|A|2412
6GSL|1|14|G|2413

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28