HL_6GSL_146

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6GSL|1|1H|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_146 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0705

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GSL|1|1H|G|382
6GSL|1|1H|U|383
6GSL|1|1H|U|384
6GSL|1|1H|C|385
6GSL|1|1H|G|386
6GSL|1|1H|U|387
6GSL|1|1H|G|388
6GSL|1|1H|G|389
6GSL|1|1H|A|390
6GSL|1|1H|G|391
6GSL|1|1H|C|392

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28