HL_6GSL_172

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

6GSL|1|1H|A|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_172 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3503

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6GSL|1|1H|C|1532
6GSL|1|1H|C|1533
6GSL|1|1H|G|1534
6GSL|1|1H|U|1535
6GSL|1|1H|A|1536
6GSL|1|1H|C|1537
6GSL|1|1H|G|1538
6GSL|1|1H|G|1539

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains