HL_6GSL_189

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_189 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3372

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GSL|1|1H|G|2303
6GSL|1|1H|G|2304
6GSL|1|1H|A|2305
6GSL|1|1H|C|2306
6GSL|1|1H|G|2307
6GSL|1|1H|G|2308
6GSL|1|1H|A|2309
6GSL|1|1H|A|2310
6GSL|1|1H|A|2311
6GSL|1|1H|U|2312
6GSL|1|1H|C|2313

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 41

50S ribosomal protein L5