HL_6GSL_206

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

G(RSP)UICG(2MA)AC

Length

9 nucleotides

Bulged bases

6GSL|1|1K|U|34

QA status

Modified nucleotides: RSP, 2MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_206 not in the Motif Atlas

Homologous match to HL_6GSL_209

Geometric discrepancy: 0.1115

The information below is about HL_6GSL_209

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.6

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6GSL|1|1K|G|32
6GSL|1|1K|RSP|33
6GSL|1|1K|U|34
6GSL|1|1K|I|35
6GSL|1|1K|C|36
6GSL|1|1K|G|37
6GSL|1|1K|2MA|38
6GSL|1|1K|A|39
6GSL|1|1K|C|40

Current chains

Chain 1K

tRNAArg

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 3I

30S ribosomal protein S12

Chain 4I

30S ribosomal protein S13

Chain 4K

mRNA