HL_6GSL_208

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CAGCUGGAG

Length

9 nucleotides

Bulged bases

6GSL|1|1L|C|16, 6GSL|1|1L|U|17, 6GSL|1|1L|G|18, 6GSL|1|1L|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSL_208 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.2898

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

6GSL|1|1L|C|13
6GSL|1|1L|A|14
6GSL|1|1L|G|15
6GSL|1|1L|C|16
6GSL|1|1L|U|17
6GSL|1|1L|G|18
6GSL|1|1L|G|19
6GSL|1|1L|A|22
6GSL|1|1L|G|23

Current chains

Chain 1L

tRNAArg

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 2L

Transfer RNA; tRNA