HL_6GSM_002
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GCUCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GSM_002 not in the Motif Atlas
- Homologous match to HL_4WT8_216
- Geometric discrepancy: 0.3684
- The information below is about HL_4WT8_216
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6GSM|1|1|G|31
6GSM|1|1|C|32
6GSM|1|1|U|33
6GSM|1|1|C|34
6GSM|1|1|A|35
6GSM|1|1|U|36
6GSM|1|1|T6A|37
6GSM|1|1|A|38
6GSM|1|1|C|39
Current chains
- Chain 1
- Met-tRNAi
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain Q
- 40S ribosomal protein S16
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain l
- Eukaryotic translation initiation factor 2 subunit beta
- Chain m
- Eukaryotic translation initiation factor eIF-1
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