HL_6GSM_005

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6GSM|1|2|U|74, 6GSM|1|2|U|77

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_005 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3045

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GSM|1|2|C|70
6GSM|1|2|A|71
6GSM|1|2|A|72
6GSM|1|2|U|73
6GSM|1|2|U|74
6GSM|1|2|U|75
6GSM|1|2|A|76
6GSM|1|2|U|77
6GSM|1|2|A|78
6GSM|1|2|C|79
6GSM|1|2|A|80
6GSM|1|2|G|81

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24