HL_6GSM_014

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CAUCCAAGGAAG

Length

12 nucleotides

Bulged bases

6GSM|1|2|A|415

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|C|410
6GSM|1|2|A|411
6GSM|1|2|U|412
6GSM|1|2|C|413
6GSM|1|2|C|414
6GSM|1|2|A|415
6GSM|1|2|A|416
6GSM|1|2|G|417
6GSM|1|2|G|418
6GSM|1|2|A|419
6GSM|1|2|A|420
6GSM|1|2|G|421

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain o

Eukaryotic translation initiation factor 3 subunit A,eIF3a

Chain p

Eukaryotic translation initiation factor 3 subunit B