HL_6GSM_019

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GACUUUAUGUC

Length

11 nucleotides

Bulged bases

6GSM|1|2|U|663

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GSM_019 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3837

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

6GSM|1|2|G|659
6GSM|1|2|A|660
6GSM|1|2|C|661
6GSM|1|2|U|662
6GSM|1|2|U|663
6GSM|1|2|U|664
6GSM|1|2|A|665
6GSM|1|2|U|666
6GSM|1|2|G|667
6GSM|1|2|U|668
6GSM|1|2|C|669

Current chains

Chain 2

18S ribosomal RNA

Nearby chains