HL_6GSM_020

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GCUAACCUGUACUCCUUGUGGGUGCAGGCGAAC

Length

33 nucleotides

Bulged bases

6GSM|1|2|C|716, 6GSM|1|2|U|719, 6GSM|1|2|U|721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GSM|1|2|G|703
6GSM|1|2|C|704
6GSM|1|2|U|705
6GSM|1|2|A|706
6GSM|1|2|A|707
6GSM|1|2|C|708
6GSM|1|2|C|709
6GSM|1|2|U|710
6GSM|1|2|G|711
6GSM|1|2|U|712
6GSM|1|2|A|713
6GSM|1|2|C|714
6GSM|1|2|U|715
6GSM|1|2|C|716
6GSM|1|2|C|717
6GSM|1|2|U|718
6GSM|1|2|U|719
6GSM|1|2|G|720
6GSM|1|2|U|721
6GSM|1|2|G|722
6GSM|1|2|G|723
6GSM|1|2|G|724
6GSM|1|2|U|725
6GSM|1|2|G|726
6GSM|1|2|C|727
6GSM|1|2|A|728
6GSM|1|2|G|729
6GSM|1|2|G|730
6GSM|1|2|C|731
6GSM|1|2|G|732
6GSM|1|2|A|733
6GSM|1|2|A|734
6GSM|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4